Tools and links

General

Github: https://github.com/xzhang03

Photometry

Nanosec photometry package (hardware and software): https://github.com/xzhang03/NidaqGUI

PicoDAQ (data acquisition hardware integrated in Nanosec): https://github.com/xzhang03/picodaq

ADS131M04 library (needed for PicoDAQ): https://github.com/xzhang03/Pico-ADS131M04

Photometry analysis: https://github.com/xzhang03/Photometry_analysis

Behavior

Mouse feeding controller: https://github.com/xzhang03/DumberboxPCB

2p and 2p-FLIM imaging

FLIM analysis: https://github.com/xzhang03/SPC_analysis

Slice optogenetics controller and LED driver: https://github.com/xzhang03/bPACstim

TIFF-based 2p image analysis: https://github.com/xzhang03/Tiff_preprocess_2023

Image local normalize: https://github.com/xzhang03/Local-normalize

Speed-optimized implementation of non-rigid image registration: https://github.com/xzhang03/Demonsreg-Oneshot

Statistics

Jeffrey’s confidence interval: https://github.com/xzhang03/Jeffi

Molecular Biology

biPAC (Collaboration with Georg Nagel and Shiqiang Gao): https://www.addgene.org/169127/

PDE4D3-Cat (Collaboration with Georg Nagel and Shiqiang Gao): https://www.addgene.org/169128/

Drosophila related

Sleep analysis (Rogulja lab): https://github.com/CrickmoreRoguljaLabs/SleepAnalysis

Fly mating video analysis (Crickmore lab): https://github.com/CrickmoreRoguljaLabs/FlyKnight